# Command-line reference Every flag both scripts accept, for the agent driving the phases or a person doing it by hand. Each tool's `SKILL.md` under `.agents/skills/` maps plain English to the common ones; this lists every flag the scripts accept and what it means, grouped by the command that takes it. ## Every command - `--version` - print the tool version and exit. - `--checkout PATH` - the clone to read from when one is used. Defaults to the current directory; when that is not a clone of the repository, the API is used instead. - `--repo owner/name` - the repository. A github.com URL is accepted too and reduced to `owner/name`. Inferred from the clone's remotes when omitted, so it is needed only where there is no clone to infer it from. ## preflight - `--remote` - force the API even when a clone is here. Without it the mode is chosen for you: a clone of the repository being triaged is used when there is one, the API otherwise. Also the way to read the branch as it is now when the clone has fallen behind and you would rather not fetch. - `--fix` - apply the items preflight marked `autofix`: fetching a base branch that has fallen behind, and restoring a shallow clone's full history. Both write to your repository, so the script does neither without this flag. The skill passes it for a stale base and reads a shallow clone through the API instead. ## select - `--older-than 18mo` - the window, as an age: `365d`, `18mo`, `2y`. Measured from last activity unless `--date-field created` is given. - `--updated-before 2025-01-01` - the window as an absolute date instead of an age, applied to whichever date field is in use. - `--date-field created` - measure the window from when a pull request was opened rather than from its last activity. Needed where a bulk update has touched every pull request; the zero-match message says so when it happens. - `--cap N` - how many to judge in one batch. Default 25, the largest size measured end to end. Gathering a pull request is expensive once; anything re-run over the same pull requests reuses the cache. - `--name X` - labels the run, so its directory and its internal per-batch report carry the name rather than only a timestamp. It does not name the window report; `--name` on `report` does that. - `--continue-from RUN_ID` or `latest` - the next batch, reusing that run's query, window, cap and scope. The pull requests that run's earlier batches judged are skipped, which is what makes batches advance. Without it a run takes every pull request in its window, earlier verdicts or not, and judges them against the base branch as it is now. - `--only-new` - skip every pull request that already has a verdict from any run. The window report then says how many others the window holds and that they were not re-checked. - `--revisit unclear` - bring back pull requests recorded with that verdict, in a continuation or an `--only-new` run. `unclear` means deferred rather than resolved, so those would otherwise never resurface. Accepts any verdict; repeatable. - `--include-triaged` - skip nothing, not even what the run's earlier batches judged. - `--base-ref REF` - the branch coverage is judged against, for a repository whose default branch cannot be detected. - `--depth quick` - record that the run is signals-only. The report renders the signals whenever no judgment has been written, so a quick run is one that stops before judging. - `--remote` - force the API; pair with `--repo`. Falling back to the API happens on its own when there is no usable clone. - Narrower selection: `--state`, `--draft`, `--label`, `--exclude-label`, `--author`, `--exclude-author`, `--review`, `--include-bots`. Note that `--label` is the GitHub label filter; the flag that names a run is `--name`. ## collect - `--run RUN_ID` - which run. - `--refetch` - throw the cached facts away and pull them again. Re-judging needs no flag: the facts are cached, so rewriting the judgment and rendering again is enough. ## signals - `--run RUN_ID` - which run. - `--remote` - read evidence through the API instead of a checkout. Blame, file contents, file existence and the tree all work, so every check works and the two modes reach the same answers. A clone is only faster and cheaper in API calls. ## report - `--run RUN_ID` - render that one batch, which is internal and stays in the cache. Omit it to render the window reports into the reports folder: one file per window per day, over every judged batch of that window, newest verdict per pull request. - `--name X` - with no `--run`, names the newest window's report `pr-triage-X-as-of-.md` instead of the automatic `pr-triage--before--as-of-.md`. - `--out PATH` - also save a copy at that path, a file or a directory. The copy in the reports folder is kept either way. - `--no-cost` - leave out the one-line cost footer every report ends with: the tool's time and API calls over the report's batches and the size of the material the judge read. For a report handed to someone else. - `--no-strict` - render even when the judgment fails validation. Its verdicts are then left out of the state later runs read. ## cost - `--run RUN_ID` - one run; omit for everything on the repository. - `--session PATH` - a Claude Code transcript to read measured token usage from, instead of estimating it. With `--run`, the window is taken from that run. - `--since`, `--until` - the transcript window, ISO 8601 to the second, overriding the run's own. ## runs - `--limit N` - how many recent runs to list. Default 10. ## forget - `--run RUN_ID` - the run to discard, so its pull requests can be triaged again. Cached facts are kept. - `--all` - discard every run for the repository. - `--yes` - actually do it. Without it, `forget` only reports what would go. The cache is per user, not per agent. Every run under `~/.cache/matter-pr-triage///` belongs to whoever runs the command, including runs another agent made on the same machine, so `forget --all` removes those too. Prefer `--run` when more than one agent shares a machine. ## Environment - `MATTER_PR_TRIAGE_CACHE` - where the cache lives, instead of `~/.cache/matter-pr-triage`. Give each agent its own value to keep their runs and state apart. - `MATTER_PR_TRIAGE_REPORTS` - where reports land, instead of `~/matter-pr-triage-reports`. Both tools write there, one subfolder per repository. # matter-pr-triage-issues The sibling's flags. Its commands take `--checkout` and `--repo` exactly as above, and most take `--pr`. ## Every command - `--version` - print the tool version and exit. - `--checkout PATH` - the clone the repository is inferred from. Defaults to the current directory. - `--repo owner/name` - the repository, as `owner/name` or a github.com URL. Inferred from the clone, or from a pull request URL given to `--pr`, when omitted. - `--pr N` - the pull request: `40191`, `#40191` or its URL. One per invocation. Taken by `gather`, `report`, `cost` and `forget`. ## gather - `--candidates N` - how many inferred candidates to keep per pull request. Default 8; each one costs the judge a read. - `--refetch` - ignore the per-issue cache, which is otherwise trusted for an hour, and fetch every issue again. - `--no-search` - skip the inferred tier and the sibling matches, so only issues linked, referencing or mentioned are gathered. - `--read ISSUE` - an issue to read in full as an inferred candidate, the judge's pick from the skim list. Repeatable. ## sync - `--full` - rebuild the corpus from scratch instead of fetching what changed since the last sync. - `--closed-months N` - how far back closed issues are kept. Default 18. - `--sibling OWNER/REPO` - also keep a corpus of that repository's issues, named as `owner/name` or as the path of a clone of it, so its issues that match a pull request by content appear under Referenced elsewhere. Remembered in `siblings.json` for later syncs, and `MATTER_PR_TRIAGE_SIBLINGS`, colon-separated, names siblings the same way. Repeatable. For project-chip/connectedhomeip the natural sibling is `CHIP-Specifications/chip-test-plans`, the test plans. ## benchmark - `--sample N` - how many pull requests with formal issue links to score. Default 60. - `--seed N` - the sampling seed, so a run can be repeated or a fresh sample drawn. Default 1. - `--k N` - the read-list size recall is measured at. Default 8, the read list's default size. - `--keep-mentions` - leave the linked issue numbers in the pull request text instead of masking them, to measure the whole pipeline rather than inference alone. ## report - `--out PATH` - also save a copy at that path, a file or a directory. The copy in the reports folder is kept either way. - `--no-strict` - render even when a judgment fails validation. Its verdicts are then left out of the state later runs read. - `--no-cost` - leave out the one-line cost footer every report ends with: issues read in full, the tool's time and API calls over every gather and report for this pull request, and the size of the material the judge read. ## list - `--from-triage VERDICT` - also list the pull requests the triage report gave this verdict, `close` for the ones recommended for closing, marking which are not done yet. Repeatable. ## cost - `--pr N` - narrow the summary to one pull request's entries. Without it, every command run against the repository. ## forget - `--yes` - actually remove the pull request's dossier, judgment and report. Without it, `forget` only reports what would go. The per-issue cache is kept.